IL_9F9S_021

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_021 not in the Motif Atlas

Homologous match to IL_8P9A_251

Geometric discrepancy: 0.0694

The information below is about IL_8P9A_251

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9F9S|1|L1|G|725
9F9S|1|L1|G|726
9F9S|1|L1|G|727
9F9S|1|L1|G|728
*
9F9S|1|L1|U|741
9F9S|1|L1|G|742
9F9S|1|L1|C|743
9F9S|1|L1|A|744
9F9S|1|L1|C|745

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LL

60S ribosomal protein L18-A

Chain Lp

60S ribosomal protein L29