IL_9F9S_022

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9F9S|1|L1|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_022 not in the Motif Atlas

Homologous match to IL_8P9A_252

Geometric discrepancy: 0.0743

The information below is about IL_8P9A_252

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

9F9S|1|L1|C|752
9F9S|1|L1|C|753
*
9F9S|1|L1|G|779
9F9S|1|L1|A|780
9F9S|1|L1|G|781

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LL

60S ribosomal protein L18-A

Chain Lp

60S ribosomal protein L29

Chain Lq

60S ribosomal protein L28