IL_9F9S_035

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

9F9S|1|L1|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_035 not in the Motif Atlas

Homologous match to IL_8P9A_265

Geometric discrepancy: 0.0571

The information below is about IL_8P9A_265

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

9F9S|1|L1|A|983
9F9S|1|L1|G|984
9F9S|1|L1|U|985
*
9F9S|1|L1|A|1099
9F9S|1|L1|U|1100

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LB

60S ribosomal protein L7-A

Chain LO

60S ribosomal protein L21-A

Chain Lp

60S ribosomal protein L29