IL_9F9S_036
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_036 not in the Motif Atlas
- Homologous match to IL_8P9A_266
- Geometric discrepancy: 0.0657
- The information below is about IL_8P9A_266
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9F9S|1|L1|G|991
9F9S|1|L1|A|992
9F9S|1|L1|G|993
9F9S|1|L1|G|994
9F9S|1|L1|U|995
9F9S|1|L1|A|996
9F9S|1|L1|A|997
*
9F9S|1|L1|U|1052
9F9S|1|L1|A|1053
9F9S|1|L1|A|1054
9F9S|1|L1|A|1055
9F9S|1|L1|U|1056
9F9S|1|L1|A|1057
9F9S|1|L1|U|1058
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain L3
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- 60S ribosomal protein L7-A
- Chain LE
- 60S ribosomal protein L10
- Chain LO
- 60S ribosomal protein L21-A
- Chain Lz
- 60S ribosomal protein L5
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