IL_9F9S_052

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUAGACAGCC*GGCCGAA

Length

18 nucleotides

Bulged bases

9F9S|1|L1|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F9S|1|L1|U|1218
9F9S|1|L1|C|1219
9F9S|1|L1|U|1220
9F9S|1|L1|A|1221
9F9S|1|L1|G|1222
9F9S|1|L1|A|1223
9F9S|1|L1|C|1224
9F9S|1|L1|A|1225
9F9S|1|L1|G|1226
9F9S|1|L1|C|1227
9F9S|1|L1|C|1228
*
9F9S|1|L1|G|1281
9F9S|1|L1|G|1282
9F9S|1|L1|C|1283
9F9S|1|L1|C|1284
9F9S|1|L1|G|1285
9F9S|1|L1|A|1286
9F9S|1|L1|A|1287

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LN

60S ribosomal protein L20-A

Chain Le

Ubiquitin-60S ribosomal protein L40