IL_9F9S_071

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_071 not in the Motif Atlas

Homologous match to IL_8P9A_300

Geometric discrepancy: 0.0915

The information below is about IL_8P9A_300

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9F9S|1|L1|U|1702
9F9S|1|L1|U|1703
9F9S|1|L1|A|1704
9F9S|1|L1|U|1705
9F9S|1|L1|C|1706
9F9S|1|L1|A|1707
*
9F9S|1|L1|U|1737
9F9S|1|L1|C|1738
9F9S|1|L1|U|1739
9F9S|1|L1|U|1740
9F9S|1|L1|A|1741
9F9S|1|L1|U|1742
9F9S|1|L1|G|1743

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Lk

60S ribosomal protein L34-A