IL_9F9S_074

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_074 not in the Motif Atlas

Homologous match to IL_8P9A_303

Geometric discrepancy: 0.049

The information below is about IL_8P9A_303

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

9F9S|1|L1|A|1895
9F9S|1|L1|A|1896
9F9S|1|L1|G|1897
*
9F9S|1|L1|C|2338
9F9S|1|L1|C|2339
9F9S|1|L1|U|2340

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain La

60S ribosomal protein L23-A

Chain Lu

60S ribosomal protein L24-A

Chain Lx

60S ribosomal protein L3