IL_9F9S_076

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_076 not in the Motif Atlas

Geometric match to IL_8C3A_484

Geometric discrepancy: 0.0629

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

9F9S|1|L1|G|1898
9F9S|1|L1|G|1899
9F9S|1|L1|A|1900
9F9S|1|L1|A|1901
9F9S|1|L1|G|1902
9F9S|1|L1|U|1903
9F9S|1|L1|C|1904
9F9S|1|L1|G|1905
9F9S|1|L1|G|1906
*
9F9S|1|L1|C|2333
9F9S|1|L1|U|2334
9F9S|1|L1|G|2335
9F9S|1|L1|U|2336
9F9S|1|L1|C|2337

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain La

60S ribosomal protein L23-A

Chain Lx

60S ribosomal protein L3