IL_9F9S_085

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

9F9S|1|L1|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F9S|1|L1|C|2204
9F9S|1|L1|U|2205
9F9S|1|L1|G|2206
9F9S|1|L1|A|2207
9F9S|1|L1|A|2208
9F9S|1|L1|U|2209
9F9S|1|L1|G|2210
*
9F9S|1|L1|C|2235
9F9S|1|L1|G|2236
9F9S|1|L1|C|2237
9F9S|1|L1|G|2238

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Lw

60S ribosomal protein L2-A

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain Sb

40S ribosomal protein S1-A