IL_9F9S_087

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_087 not in the Motif Atlas

Geometric match to IL_8C3A_094

Geometric discrepancy: 0.0745

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

9F9S|1|L1|G|2276
9F9S|1|L1|C|2277
*
9F9S|1|L1|G|2307
9F9S|1|L1|C|2308
9F9S|1|L1|A|2309
9F9S|1|L1|U|2310

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain CP

Transfer RNA; tRNA

Chain Ld

60S ribosomal protein L41-A