IL_9F9S_098
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUCC*GC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_098 not in the Motif Atlas
- Homologous match to IL_8C3A_110
- Geometric discrepancy: 0.1006
- The information below is about IL_8C3A_110
- Detailed Annotation
- Single stack bend
- Broad Annotation
- Single stack bend
- Motif group
- IL_39137.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9F9S|1|L1|G|2770
9F9S|1|L1|U|2771
9F9S|1|L1|C|2772
9F9S|1|L1|C|2773
*
9F9S|1|L1|G|2787
9F9S|1|L1|C|2788
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain LG
- 60S ribosomal protein L13-A
- Chain LL
- 60S ribosomal protein L18-A
- Chain Lc
- 60S ribosomal protein L42-A
- Chain Lq
- 60S ribosomal protein L28
Coloring options: