IL_9F9S_102

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_102 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.0861

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9F9S|1|L1|U|2835
9F9S|1|L1|C|2836
9F9S|1|L1|A|2837
9F9S|1|L1|A|2838
9F9S|1|L1|G|2839
*
9F9S|1|L1|C|2849
9F9S|1|L1|G|2850
9F9S|1|L1|A|2851
9F9S|1|L1|C|2852
9F9S|1|L1|A|2853

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LE

60S ribosomal protein L10

Chain Le

Ubiquitin-60S ribosomal protein L40