IL_9F9S_108

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

9F9S|1|L1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_108 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.1049

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

9F9S|1|L1|U|2891
9F9S|1|L1|A|2892
*
9F9S|1|L1|U|2909
9F9S|1|L1|A|2910
9F9S|1|L1|A|2911
9F9S|1|L1|G|2912

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LD

60S ribosomal protein L9-A

Chain LJ

60S ribosomal protein L16-A

Chain Le

Ubiquitin-60S ribosomal protein L40