IL_9F9S_127

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

9F9S|1|L1|U|3319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_127 not in the Motif Atlas

Homologous match to IL_8C3A_136

Geometric discrepancy: 0.2259

The information below is about IL_8C3A_136

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9F9S|1|L1|G|3318
9F9S|1|L1|U|3319
9F9S|1|L1|A|3320
*
9F9S|1|L1|U|3387
9F9S|1|L1|C|3388

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Ln

60S ribosomal protein L31-A

Chain Lx

60S ribosomal protein L3