IL_9F9S_141
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 9F9S|1|L3|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_141 not in the Motif Atlas
- Homologous match to IL_8P9A_369
- Geometric discrepancy: 0.087
- The information below is about IL_8P9A_369
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9F9S|1|L3|A|72
9F9S|1|L3|C|73
9F9S|1|L3|C|74
9F9S|1|L3|G|75
9F9S|1|L3|A|76
9F9S|1|L3|G|77
9F9S|1|L3|U|78
9F9S|1|L3|A|79
9F9S|1|L3|G|80
*
9F9S|1|L3|C|100
9F9S|1|L3|G|101
9F9S|1|L3|A|102
9F9S|1|L3|A|103
9F9S|1|L3|A|104
9F9S|1|L3|C|105
9F9S|1|L3|U|106
Current chains
- Chain L3
- Saccharomyces cerevisiae S288C 5S ribosomal RNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LB
- 60S ribosomal protein L7-A
- Chain LE
- 60S ribosomal protein L10
- Chain LN
- 60S ribosomal protein L20-A
- Chain LO
- 60S ribosomal protein L21-A
Coloring options: