IL_9F9S_157
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 9F9S|1|M1|A|398, 9F9S|1|M1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_157 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.0895
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
9F9S|1|M1|G|376
9F9S|1|M1|A|377
9F9S|1|M1|A|378
9F9S|1|M1|C|379
*
9F9S|1|M1|G|390
9F9S|1|M1|A|391
9F9S|1|M1|G|392
9F9S|1|M1|U|393
9F9S|1|M1|G|394
9F9S|1|M1|A|395
9F9S|1|M1|A|396
9F9S|1|M1|A|397
9F9S|1|M1|A|398
9F9S|1|M1|A|399
9F9S|1|M1|G|400
9F9S|1|M1|U|401
9F9S|1|M1|A|402
9F9S|1|M1|C|403
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain M2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain MK
- 60S ribosomal protein L17-A
- Chain Mf
- 60S ribosomal protein L39
- Chain Ms
- 60S ribosomal protein L26-A
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