IL_9F9S_162
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 9F9S|1|M1|U|534, 9F9S|1|M1|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_162 not in the Motif Atlas
- Homologous match to IL_8P9A_248
- Geometric discrepancy: 0.078
- The information below is about IL_8P9A_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25001.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9F9S|1|M1|G|531
9F9S|1|M1|A|532
9F9S|1|M1|A|533
9F9S|1|M1|U|534
9F9S|1|M1|G|535
9F9S|1|M1|U|536
9F9S|1|M1|A|537
9F9S|1|M1|G|538
*
9F9S|1|M1|U|553
9F9S|1|M1|A|554
9F9S|1|M1|U|555
9F9S|1|M1|U|556
9F9S|1|M1|A|557
9F9S|1|M1|U|558
9F9S|1|M1|A|559
9F9S|1|M1|G|560
9F9S|1|M1|C|561
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MH
- 60S ribosomal protein L14-A
- Chain MN
- 60S ribosomal protein L20-A
Coloring options: