IL_9F9S_168

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_168 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.0887

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9F9S|1|M1|C|758
9F9S|1|M1|U|759
9F9S|1|M1|G|760
9F9S|1|M1|A|761
9F9S|1|M1|U|762
9F9S|1|M1|G|763
*
9F9S|1|M1|C|768
9F9S|1|M1|G|769
9F9S|1|M1|G|770
9F9S|1|M1|A|771
9F9S|1|M1|U|772
9F9S|1|M1|G|773

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MG

60S ribosomal protein L13-A

Chain Mc

60S ribosomal protein L42-A

Chain Mq

60S ribosomal protein L28