IL_9F9S_177
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_177 not in the Motif Atlas
- Homologous match to IL_8P9A_262
- Geometric discrepancy: 0.0772
- The information below is about IL_8P9A_262
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
9F9S|1|M1|U|954
9F9S|1|M1|U|955
9F9S|1|M1|U|956
*
9F9S|1|M1|A|965
9F9S|1|M1|U|966
9F9S|1|M1|A|967
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MG
- 60S ribosomal protein L13-A
- Chain ML
- 60S ribosomal protein L18-A
- Chain MO
- 60S ribosomal protein L21-A
- Chain Mp
- 60S ribosomal protein L29
- Chain Mq
- 60S ribosomal protein L28
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