IL_9F9S_199

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9F9S|1|M1|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_199 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.3116

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

9F9S|1|M1|G|1262
9F9S|1|M1|A|1263
9F9S|1|M1|G|1264
9F9S|1|M1|U|1265
9F9S|1|M1|G|1266
*
9F9S|1|M1|C|1275
9F9S|1|M1|U|1276
9F9S|1|M1|C|1277

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MP

60S ribosomal protein L12-A

Chain MQ

60S acidic ribosomal protein P0