IL_9F9S_217
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 9F9S|1|M1|U|1716, 9F9S|1|M1|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_217 not in the Motif Atlas
- Homologous match to IL_8P9A_301
- Geometric discrepancy: 0.0743
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.1
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9F9S|1|M1|C|1711
9F9S|1|M1|G|1712
9F9S|1|M1|G|1713
9F9S|1|M1|A|1714
9F9S|1|M1|A|1715
9F9S|1|M1|U|1716
9F9S|1|M1|U|1717
*
9F9S|1|M1|G|1727
9F9S|1|M1|G|1728
9F9S|1|M1|A|1729
9F9S|1|M1|G|1730
9F9S|1|M1|A|1731
9F9S|1|M1|U|1732
9F9S|1|M1|G|1733
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MM
- 60S ribosomal protein L19-A
- Chain Mb
- 60S ribosomal protein L43-A
- Chain Mo
- 60S ribosomal protein L30
- Chain Mr
- 60S ribosomal protein L27-A
- Chain Rn
- 40S ribosomal protein S13
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