IL_9F9S_220

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAA*U(OMC)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_220 not in the Motif Atlas

Geometric match to IL_8C3A_082

Geometric discrepancy: 0.0754

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

9F9S|1|M1|G|1898
9F9S|1|M1|G|1899
9F9S|1|M1|A|1900
9F9S|1|M1|A|1901
*
9F9S|1|M1|U|2336
9F9S|1|M1|OMC|2337

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Ma

60S ribosomal protein L23-A

Chain Mx

60S ribosomal protein L3