IL_9F9S_221
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAGUCGG*CUGU(OMC)
- Length
- 14 nucleotides
- Bulged bases
- 9F9S|1|M1|G|2335
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_221 not in the Motif Atlas
- Geometric match to IL_8C3A_484
- Geometric discrepancy: 0.0577
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
9F9S|1|M1|G|1898
9F9S|1|M1|G|1899
9F9S|1|M1|A|1900
9F9S|1|M1|A|1901
9F9S|1|M1|G|1902
9F9S|1|M1|U|1903
9F9S|1|M1|C|1904
9F9S|1|M1|G|1905
9F9S|1|M1|G|1906
*
9F9S|1|M1|C|2333
9F9S|1|M1|U|2334
9F9S|1|M1|G|2335
9F9S|1|M1|U|2336
9F9S|1|M1|OMC|2337
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain Ma
- 60S ribosomal protein L23-A
- Chain Mx
- 60S ribosomal protein L3
Coloring options: