IL_9F9S_228

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

9F9S|1|M1|OMC|2197

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_228 not in the Motif Atlas

Homologous match to IL_8P9A_312

Geometric discrepancy: 0.0726

The information below is about IL_8P9A_312

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

9F9S|1|M1|C|2196
9F9S|1|M1|OMC|2197
9F9S|1|M1|A|2198
9F9S|1|M1|G|2199
*
9F9S|1|M1|C|2245
9F9S|1|M1|G|2246

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Mw

60S ribosomal protein L2-A

Chain R1

Small subunit ribosomal RNA; SSU rRNA