IL_9F9S_229

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9F9S|1|M1|A|2242, 9F9S|1|M1|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_229 not in the Motif Atlas

Homologous match to IL_8P9A_313

Geometric discrepancy: 0.0686

The information below is about IL_8P9A_313

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

9F9S|1|M1|U|2200
9F9S|1|M1|G|2201
*
9F9S|1|M1|U|2241
9F9S|1|M1|A|2242
9F9S|1|M1|A|2243
9F9S|1|M1|A|2244

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Mw

60S ribosomal protein L2-A

Chain R1

Small subunit ribosomal RNA; SSU rRNA