IL_9F9S_241

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGUAGAAUAAGUG*CUAC

Length

18 nucleotides

Bulged bases

9F9S|1|M1|U|2453, 9F9S|1|M1|U|2460, 9F9S|1|M1|G|2463, 9F9S|1|M1|U|2464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F9S|1|M1|G|2452
9F9S|1|M1|U|2453
9F9S|1|M1|G|2454
9F9S|1|M1|U|2455
9F9S|1|M1|A|2456
9F9S|1|M1|G|2457
9F9S|1|M1|A|2458
9F9S|1|M1|A|2459
9F9S|1|M1|U|2460
9F9S|1|M1|A|2461
9F9S|1|M1|A|2462
9F9S|1|M1|G|2463
9F9S|1|M1|U|2464
9F9S|1|M1|G|2465
*
9F9S|1|M1|C|2492
9F9S|1|M1|U|2493
9F9S|1|M1|A|2494
9F9S|1|M1|C|2495

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain DQ

Transfer RNA; tRNA