IL_9F9S_316

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUAC*GUAAUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F9S|1|R1|G|480
9F9S|1|R1|A|481
9F9S|1|R1|U|482
9F9S|1|R1|A|483
9F9S|1|R1|C|484
*
9F9S|1|R1|G|503
9F9S|1|R1|U|504
9F9S|1|R1|A|505
9F9S|1|R1|A|506
9F9S|1|R1|U|507
9F9S|1|R1|U|508

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain CN

Multiprotein-bridging factor 1

Chain RE

40S ribosomal protein S30-A

Chain Rj

40S ribosomal protein S9-A