IL_9F9S_317

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

9F9S|1|R1|G|539, 9F9S|1|R1|G|540, 9F9S|1|R1|A|541, 9F9S|1|R1|A|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_317 not in the Motif Atlas

Geometric match to IL_5TBW_095

Geometric discrepancy: 0.3009

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

9F9S|1|R1|G|514
9F9S|1|R1|A|515
9F9S|1|R1|G|516
*
9F9S|1|R1|C|536
9F9S|1|R1|G|537
9F9S|1|R1|A|538
9F9S|1|R1|G|539
9F9S|1|R1|G|540
9F9S|1|R1|A|541
9F9S|1|R1|A|542
9F9S|1|R1|C|543

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain RE

40S ribosomal protein S30-A

Chain Rj

40S ribosomal protein S9-A