IL_9F9S_328

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUAACCUUGAGUC*GGCUCUUGGCGAAC

Length

28 nucleotides

Bulged bases

9F9S|1|R1|U|715, 9F9S|1|R1|G|729, 9F9S|1|R1|G|732, 9F9S|1|R1|A|733

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F9S|1|R1|G|703
9F9S|1|R1|C|704
9F9S|1|R1|U|705
9F9S|1|R1|A|706
9F9S|1|R1|A|707
9F9S|1|R1|C|708
9F9S|1|R1|C|709
9F9S|1|R1|U|710
9F9S|1|R1|U|711
9F9S|1|R1|G|712
9F9S|1|R1|A|713
9F9S|1|R1|G|714
9F9S|1|R1|U|715
9F9S|1|R1|C|716
*
9F9S|1|R1|G|722
9F9S|1|R1|G|723
9F9S|1|R1|C|724
9F9S|1|R1|U|725
9F9S|1|R1|C|726
9F9S|1|R1|U|727
9F9S|1|R1|U|728
9F9S|1|R1|G|729
9F9S|1|R1|G|730
9F9S|1|R1|C|731
9F9S|1|R1|G|732
9F9S|1|R1|A|733
9F9S|1|R1|A|734
9F9S|1|R1|C|735

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Lr

60S ribosomal protein L27-A

Chain Re

40S ribosomal protein S4-A