IL_9F9S_340

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F9S|1|R1|C|990
9F9S|1|R1|G|991
9F9S|1|R1|A|992
9F9S|1|R1|A|993
9F9S|1|R1|G|994
*
9F9S|1|R1|C|1010
9F9S|1|R1|G|1011
9F9S|1|R1|U|1012
9F9S|1|R1|A|1013
9F9S|1|R1|G|1014

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain M1

Large subunit ribosomal RNA; LSU rRNA

Chain Mw

60S ribosomal protein L2-A

Chain RA

Small ribosomal subunit protein eS26A

Chain Ro

40S ribosomal protein S14-B