IL_9F9S_352

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_352 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3995

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9F9S|1|R1|G|1233
9F9S|1|R1|A|1234
9F9S|1|R1|C|1235
9F9S|1|R1|A|1236
*
9F9S|1|R1|U|1249
9F9S|1|R1|U|1250
9F9S|1|R1|U|1251
9F9S|1|R1|C|1252

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain RD

Small ribosomal subunit protein uS14A

Chain RF

Ubiquitin

Chain Rk

40S ribosomal protein S10-A

Chain Rm

40S ribosomal protein S12