IL_9F9S_364
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_364 not in the Motif Atlas
- Homologous match to IL_8C3A_466
- Geometric discrepancy: 0.0895
- The information below is about IL_8C3A_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48143.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|R1|G|1480
9F9S|1|R1|C|1481
9F9S|1|R1|C|1482
9F9S|1|R1|A|1483
9F9S|1|R1|G|1484
9F9S|1|R1|C|1485
9F9S|1|R1|G|1486
9F9S|1|R1|A|1487
*
9F9S|1|R1|U|1519
9F9S|1|R1|U|1520
9F9S|1|R1|G|1521
9F9S|1|R1|U|1522
9F9S|1|R1|G|1523
9F9S|1|R1|A|1524
9F9S|1|R1|A|1525
9F9S|1|R1|A|1526
9F9S|1|R1|C|1527
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain RD
- Small ribosomal subunit protein uS14A
- Chain Rd
- Small ribosomal subunit protein uS3
- Chain Rf
- 40S ribosomal protein S5
- Chain Rq
- 40S ribosomal protein S16-A
- Chain Rt
- 40S ribosomal protein S19-A
- Chain Ru
- Small ribosomal subunit protein uS10
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