IL_9F9S_374

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

9F9S|1|R1|U|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_374 not in the Motif Atlas

Homologous match to IL_8P9A_458

Geometric discrepancy: 0.2039

The information below is about IL_8P9A_458

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9F9S|1|R1|U|1656
9F9S|1|R1|U|1657
9F9S|1|R1|G|1658
*
9F9S|1|R1|U|1743
9F9S|1|R1|A|1744

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain M1

Large subunit ribosomal RNA; LSU rRNA

Chain Ma

60S ribosomal protein L23-A

Chain Md

60S ribosomal protein L41-A

Chain Rx

40S ribosomal protein S23-A