IL_9F9S_375

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAGUGAG*CAAACUUGG

Length

18 nucleotides

Bulged bases

9F9S|1|R1|U|1666, 9F9S|1|R1|A|1667, 9F9S|1|R1|G|1668, 9F9S|1|R1|U|1669, 9F9S|1|R1|G|1670, 9F9S|1|R1|A|1730, 9F9S|1|R1|A|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F9S|1|R1|C|1664
9F9S|1|R1|U|1665
9F9S|1|R1|U|1666
9F9S|1|R1|A|1667
9F9S|1|R1|G|1668
9F9S|1|R1|U|1669
9F9S|1|R1|G|1670
9F9S|1|R1|A|1671
9F9S|1|R1|G|1672
*
9F9S|1|R1|C|1729
9F9S|1|R1|A|1730
9F9S|1|R1|A|1731
9F9S|1|R1|A|1732
9F9S|1|R1|C|1733
9F9S|1|R1|U|1734
9F9S|1|R1|U|1735
9F9S|1|R1|G|1736
9F9S|1|R1|G|1737

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain M1

Large subunit ribosomal RNA; LSU rRNA

Chain Ma

60S ribosomal protein L23-A

Chain Mu

60S ribosomal protein L24-A

Chain Rg

40S ribosomal protein S6-A

Chain Ri

40S ribosomal protein S8-A