IL_9F9S_392

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

9F9S|1|S1|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_392 not in the Motif Atlas

Homologous match to IL_8P9A_386

Geometric discrepancy: 0.5174

The information below is about IL_8P9A_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

9F9S|1|S1|G|204
9F9S|1|S1|U|205
9F9S|1|S1|A|206
*
9F9S|1|S1|U|259
9F9S|1|S1|U|260
9F9S|1|S1|U|261
9F9S|1|S1|U|262
9F9S|1|S1|C|263

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Se

40S ribosomal protein S4-A

Chain Sg

40S ribosomal protein S6-A

Chain Si

40S ribosomal protein S8-A