IL_9F9S_405

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

9F9S|1|S1|A|506

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_405 not in the Motif Atlas

Homologous match to IL_8P9A_399

Geometric discrepancy: 0.3689

The information below is about IL_8P9A_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9F9S|1|S1|A|481
9F9S|1|S1|U|482
*
9F9S|1|S1|A|505
9F9S|1|S1|A|506
9F9S|1|S1|U|507

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain SE

40S ribosomal protein S30-A

Chain Sj

40S ribosomal protein S9-A