IL_9F9S_412

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

9F9S|1|S1|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_412 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.0861

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9F9S|1|S1|G|616
9F9S|1|S1|U|617
9F9S|1|S1|U|618
9F9S|1|S1|A|619
9F9S|1|S1|A|620
9F9S|1|S1|A|621
9F9S|1|S1|A|622
*
9F9S|1|S1|U|1104
9F9S|1|S1|C|1105

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain SA

Small ribosomal subunit protein eS26A

Chain Sx

40S ribosomal protein S23-A