IL_9F9S_420

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_420 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.116

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

9F9S|1|S1|A|865
9F9S|1|S1|G|866
*
9F9S|1|S1|C|962
9F9S|1|S1|A|963
9F9S|1|S1|U|964
9F9S|1|S1|U|965

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain SB

40S ribosomal protein S27-A

Chain Sn

40S ribosomal protein S13

Chain Sw

40S ribosomal protein S22-A