IL_9F9S_427
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_427 not in the Motif Atlas
- Homologous match to IL_8C3A_442
- Geometric discrepancy: 0.1728
- The information below is about IL_8C3A_442
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9F9S|1|S1|C|990
9F9S|1|S1|G|991
9F9S|1|S1|A|992
9F9S|1|S1|A|993
9F9S|1|S1|G|994
*
9F9S|1|S1|C|1010
9F9S|1|S1|G|1011
9F9S|1|S1|U|1012
9F9S|1|S1|A|1013
9F9S|1|S1|G|1014
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lw
- 60S ribosomal protein L2-A
- Chain SA
- Small ribosomal subunit protein eS26A
- Chain So
- 40S ribosomal protein S14-A
Coloring options: