IL_9F9S_428
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 9F9S|1|S1|C|1096, 9F9S|1|S1|U|1098, 9F9S|1|S1|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_428 not in the Motif Atlas
- Homologous match to IL_8C3A_443
- Geometric discrepancy: 0.0902
- The information below is about IL_8C3A_443
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47729.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|S1|C|1034
9F9S|1|S1|G|1035
9F9S|1|S1|A|1036
*
9F9S|1|S1|U|1095
9F9S|1|S1|C|1096
9F9S|1|S1|U|1097
9F9S|1|S1|U|1098
9F9S|1|S1|U|1099
9F9S|1|S1|G|1100
9F9S|1|S1|G|1101
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain SB
- 40S ribosomal protein S27-A
- Chain Sc
- 40S ribosomal protein S2
- Chain Sl
- 40S ribosomal protein S11-A
- Chain Sn
- 40S ribosomal protein S13
- Chain Sw
- 40S ribosomal protein S22-A
- Chain Sx
- 40S ribosomal protein S23-A
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