IL_9F9S_432

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9F9S|1|S1|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_432 not in the Motif Atlas

Homologous match to IL_8C3A_447

Geometric discrepancy: 0.1271

The information below is about IL_8C3A_447

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

9F9S|1|S1|G|1146
9F9S|1|S1|A|1147
*
9F9S|1|S1|U|1630
9F9S|1|S1|A|1631
9F9S|1|S1|C|1632

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain SA

Small ribosomal subunit protein eS26A

Chain Sc

40S ribosomal protein S2