IL_9F9S_434
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 9F9S|1|S1|C|1158, 9F9S|1|S1|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_434 not in the Motif Atlas
- Homologous match to IL_8P9A_431
- Geometric discrepancy: 0.101
- The information below is about IL_8P9A_431
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
9F9S|1|S1|A|1157
9F9S|1|S1|C|1158
9F9S|1|S1|C|1159
9F9S|1|S1|A|1160
*
9F9S|1|S1|U|1617
9F9S|1|S1|C|1618
9F9S|1|S1|C|1619
9F9S|1|S1|C|1620
9F9S|1|S1|U|1621
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain CM
- mRNA
- Chain CP
- Transfer RNA; tRNA
- Chain SC
- Small ribosomal subunit protein eS28B
- Chain Sf
- 40S ribosomal protein S5
- Chain Sq
- 40S ribosomal protein S16-A
Coloring options: