IL_9F9S_444
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9F9S|1|S1|C|1274, 9F9S|1|S1|U|1432, 9F9S|1|S1|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_444 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.0968
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9F9S|1|S1|U|1272
9F9S|1|S1|G|1273
9F9S|1|S1|C|1274
9F9S|1|S1|A|1275
9F9S|1|S1|U|1276
9F9S|1|S1|G|1277
9F9S|1|S1|G|1278
*
9F9S|1|S1|U|1430
9F9S|1|S1|C|1431
9F9S|1|S1|U|1432
9F9S|1|S1|G|1433
9F9S|1|S1|U|1434
9F9S|1|S1|G|1435
9F9S|1|S1|A|1436
9F9S|1|S1|U|1437
9F9S|1|S1|G|1438
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS14A
- Chain Sd
- Small ribosomal subunit protein uS3
- Chain Sk
- 40S ribosomal protein S10-A
- Chain Su
- Small ribosomal subunit protein uS10
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