IL_9F9S_466

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_466 not in the Motif Atlas

Homologous match to IL_8P9A_461

Geometric discrepancy: 0.1422

The information below is about IL_8P9A_461

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9F9S|1|S1|G|1672
9F9S|1|S1|G|1673
9F9S|1|S1|C|1674
*
9F9S|1|S1|G|1727
9F9S|1|S1|A|1728
9F9S|1|S1|C|1729

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain Sg

40S ribosomal protein S6-A

Chain Si

40S ribosomal protein S8-A