IL_9FBV_022

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FBV_022 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.0886

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9FBV|1|A|G|450
9FBV|1|A|A|451
9FBV|1|A|A|452
9FBV|1|A|G|453
9FBV|1|A|G|454
9FBV|1|A|G|455
*
9FBV|1|A|C|477
9FBV|1|A|A|478
9FBV|1|A|U|479
9FBV|1|A|U|480
9FBV|1|A|G|481
9FBV|1|A|A|482
9FBV|1|A|C|483

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16