IL_9FBV_103
3D structure
- PDB id
- 9FBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with P-site initiatior tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9FBV_103 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.109
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
9FBV|1|a|G|1038
9FBV|1|a|A|1039
9FBV|1|a|A|1040
9FBV|1|a|G|1041
*
9FBV|1|a|C|1114
9FBV|1|a|G|1115
9FBV|1|a|G|1116
9FBV|1|a|C|1117
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain g
- Large ribosomal subunit protein uL6
- Chain l
- Large ribosomal subunit protein uL16
- Chain u
- 50S ribosomal protein L25
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