3D structure

PDB id
9FBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with P-site initiatior tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUC*GCGAG
Length
8 nucleotides
Bulged bases
9FBV|1|a|G|2576, 9FBV|1|a|A|2577
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9FBV_155 not in the Motif Atlas
Homologous match to IL_5J7L_340
Geometric discrepancy: 0.0641
The information below is about IL_5J7L_340
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

9FBV|1|a|C|2510
9FBV|1|a|U|2511
9FBV|1|a|C|2512
*
9FBV|1|a|G|2574
9FBV|1|a|C|2575
9FBV|1|a|G|2576
9FBV|1|a|A|2577
9FBV|1|a|G|2578

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain d
Large ribosomal subunit protein uL3
Chain z
Large ribosomal subunit protein bL32

Coloring options:


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