3D structure

PDB id
9FBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with P-site initiatior tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
(5MC)AC*GAAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9FBV_177 not in the Motif Atlas
Homologous match to IL_5J7L_364
Geometric discrepancy: 0.1856
The information below is about IL_5J7L_364
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_90351.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
8

Unit IDs

9FBV|1|A|5MC|1407
9FBV|1|A|A|1408
9FBV|1|A|C|1409
*
9FBV|1|A|G|1491
9FBV|1|A|A|1492
9FBV|1|A|A|1493
9FBV|1|A|G|1494

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain L
Small ribosomal subunit protein uS12
Chain X
messenger RNA
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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