IL_9FBV_179

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FBV_179 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0316

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9FBV|1|a|G|1666
9FBV|1|a|G|1667
9FBV|1|a|A|1668
9FBV|1|a|A|1669
9FBV|1|a|C|1670
9FBV|1|a|U|1671
9FBV|1|a|A|1672
9FBV|1|a|G|1673
9FBV|1|a|G|1674
*
9FBV|1|a|C|1990
9FBV|1|a|U|1991
9FBV|1|a|G|1992
9FBV|1|a|U|1993
9FBV|1|a|C|1994

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14