IL_9FBV_180

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FBV_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0604

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9FBV|1|a|U|1851
9FBV|1|a|U|1852
9FBV|1|a|A|1853
9FBV|1|a|A|1854
9FBV|1|a|U|1855
9FBV|1|a|U|1856
9FBV|1|a|G|1857
9FBV|1|a|A|1858
9FBV|1|a|U|1859
9FBV|1|a|G|1860
*
9FBV|1|a|U|1882
9FBV|1|a|U|1883
9FBV|1|a|G|1884
9FBV|1|a|A|1885
9FBV|1|a|U|1886
9FBV|1|a|C|1887
9FBV|1|a|G|1888
9FBV|1|a|A|1889
9FBV|1|a|A|1890
9FBV|1|a|G|1891

Current chains

Chain a

23S ribosomal RNA

Nearby chains